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* original backend implementation uses unionfs-specific "changes only" dir to determine "changed" status. this breaks when it involves deactivated nodes.
* new library design uses explicit per-node "changed" marker. however, since previously "commit" only handles a root "changed" marker, the new library could not implement this scheme and used a workaround instead.
* now add API functions for "commit" to properly clean up "changed" markers.
* modify "commit" to use these API functions and remove the workaround from the new library.
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