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of the init class are reset so that when they are
regenerated that they will use the updated data
instead of using previous data (since they weren't reset).
LP: #1076811
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Use only util methods for reading/loading/appending/peeking
at files since it is likely soon that we will add a new
way of adjusting the root of files read, also it is useful
for debugging to track what is being read/written in a central
fashion.
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a. This allows them to be run as different tools (if desired)
2. Adjust the makefile to have a 'make pep8' section which can run this new script
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